WebMay 10, 2024 · No MetaPhlAn BowTie2 database found [–bowtie2db option]! (or wrong path provided). Expecting location $ {mpa_dir}/db_v20/map_v20_m200 Exiting… I checked the bin directory and there was no directory call “db_v20”. Is there anyway I can download the bowtie indices myself? WebJan 28, 2024 · Unzip and apply chmod -R 757 to directory with bowtie2 Run metaphlan with --bowtie2_exe path_to/bowtie2 parameter Ptero64 July 9, 2024, 7:53am 6 Hello, I contact you because I have the same problem to run --install --bowtie2 after installing metaphlan with conda. Iam on a hpc so no sudo possible. I downloaded bowtie2 and use this …
No MetaPhlAn BowTie2 database found (--index option)!
WebJun 27, 2024 · The indexes are searched into the "metaphlan_databases" folder, but in the error you reported the set folder is "bowtie2db", which is not the default, and this is … WebSep 21, 2024 · Hi, I’m trying to run humann2 locally (macOS), I understand that proper dependencies should be installed using ‘conda install -c biobakery humann2’. In my case I got humann2 v2.8.1, MetaPhlAn version 2.6.0, diamond version 0.8.36, and Bowtie 2 version 2.3.5.1. Select the file location with the option --mpa_pkl. does walmart rent crutches
No MetaPhlAn BowTie2 database found (--index option)!
WebOct 28, 2024 · am currently using MetaPhlAn version 3.0.13 which I downloaded through conda install. As instructed in the manual, I downloaded the database in a folder outside the Conda environment, by running this: $ metaphlan --install --bowtie2db Then I tried the following code with two fastq.gz forward and reverse reads for one sample and indicated … WebOct 12, 2024 · figbeirns October 12, 2024, 12:10pm #3 This was happening when I was running metaphlan via humann. My solution in the end was to download the bowtie2db into a separate directory and literally copy the … WebMay 17, 2024 · Thank you for creating this issue. We currently field issues through our bioBakery Discourse Support Forum. If you would please post the issue to discourse we … does walmart process film